Araştırma Makalesi
Yıl 2018,
, 407 - 411, 09.11.2018
Öz
Kaynakça
- 1. Acar S, Bulut E, Durul B ve ark. (2017): Phenotyping and genetic characterization of Salmonella enterica isolates from Turkey revealing arise of different features specific to geography. Int J Food Micro, 241, 98-107.
- 2. Achtman M, Wain J, Weil FX ve ark. (2012): Multilocus Sequence Typing as a replacement for serotyping in Salmonella enterica. Plos Pathog, 8, 15-16.
- 3. Almeida F, Pitondo-Sılva A, Aparecida OM ve ark. (2013): Molecular epidemiology and virulence markers of Salmonella Infantis isolated over 25 years in São Paulo State, Brazil. Infect Genet Evol, 19, 145-151.
- 4. Andrei A, Zervos MJ (2006): The application of molecular techniques to the study of hospital infection. Arch Pathol Lab Med, 130, 662-668.
- 5. Antunes P, Mourão J, Machado J ve ark. (2011): First description of qnrS1 IncN plasmid in a ST11 Salmonella Enteritidis clinical isolate from Portugal. Diagn Micr Infec Dis, 69, 463–465.
- 6. Bado I, García-Fulgueiras V, Cordeiro NF ve ark. (2012): First Human Isolate of Salmonella enterica Serotype Enteritidis Harboring blaCTX-M-14 in South America. Antimicrob Agents Ch, 56, 2132-2134.
- 7. Cai Y, Tao J, Jiao Y ve ark. (2016): Phenotypic characteristics and genotypic correlation between Salmonella isolates from a slaughterhouse and retail markets in Yangzhou, China. Int J Food Microbiol, 222, 5664.
- 8. Carattoli A, Filetici E, Villa L ve ark. (2002): Antibiotic Resistance Genes and Salmonella Genomic Island 1 in Salmonella enterica Serovar Typhimurium Isolated in Italy. Antimicrob Agents Ch, 46, 2821–2828.
- 9. David M, Aanensen DM, Spratt BG (2005): The Multilocus Sequence Typing Network: mlst.net. Nucl Acids Res, 33, 772-733.
- 10. Dione M (2010): Epidemiology of Non-Typhoidal Salmonella (Nts) in Humans and Animals in the Gambia and Senegal. Tropıcultura, 28, 253-256.
- 11. Durul B, Acar S, Bulut E ve ark. (2015): Subtyping of Salmonella food isolates suggests the geographic clustering of serotype Telaviv. Foodborne Pathog Dis, 12, 1-4.
- 12. EFSA (2012): Scientific Opinion of the Panel on Biological Hazards on a request from the European Commission on special measures to reduce the risk for consumers through Salmonella in table eggs-e.g. cooling of table eggs. EFSA J, 957, 1-19.
- 13. Feasey NA, Dougan G, Kingsley RA ve ark. (2012): Invasive non-typhoidal Salmonella disease: an emerging and neglected tropical disease in Africa. Lancet, 379, 2489–2499.
- 14. Felsenstein J (1985): Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
- 15. Ghaderi R, Tadayon K, Khaki P ve ark. (2015): Iranian clonal population of Salmonella enterica serovar Enteritidis, characterized by multi-locus sequence typing (MLST) Method. I J M, 7, 251-259.
- 16. Grimont PAD, Weill FX. (2007). Antigenic formulae of the Salmonella serovars. Institut Pasteur, 9, 15-166.
- 17. Günel E, Kılıc G, Bulut E ve ark. (2015): Salmonella surveillance on fresh produce in retail in Turkey. Int J Food Micro, 199, 72-77.
- 18. Ho YN, Chou MY, Tsai HC ve ark. (2017): Empirical testing of modified Salmonella MLST in aquatic environmental samples by in silico analysis. Sci Total Environ, 581-582, 378–380.
- 19. Hoszowski A, Zajac M, Lalak A ve ark. (2016): Fifteen years of successful spread of Salmonella enterica serovar Mbandaka clone ST413 in Poland and its public health consequences. Ann Agr Env Med, 23, 237–241.
- 20. Imperial College (2007): Multi Locus Sequence Typing. http://www.mlst.net/. (5 Nisan 2017)
- 21. ISO 6579 (2002): General guidance on methods for the detection of Salmonella. International organisation for standardization. Microbiology, 4, 1-19.
- 22. Kidgell C, Reichard U, Wain J ve ark. (2002): Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol, 2, 39–40.
- 23. Kotetishvili M, Stine O, Kreger A, Morris Jg, Sulakvelidze A (2002): Multilocus sequence typing for characterization of clinical and environmental salmonella strains. J Clin Microbiol, 40, 1626-1635.
- 24. Kumar S, Stecher G, Tamura K (2016): MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol, 33, 1870-1874.
- 25. Li YC, Pan ZM, Kang XL ve ark. (2014): Prevalence, Characteristics, and Antimicrobial Resistance Patterns of Salmonella in Retail Pork in Jiangsu Province, Eastern China. J Food Protect, 77, 236–245.
- 26. Lublin A, Maler I, Mechani S ve ark. (2015): Survival of Salmonella enterica serovar Infantis on and within stored table eggs. J Food Protect, 78, 287-292.
- 27. Maiden MCJ, Bygraves A, Feil E ve ark. (1998): Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci, 95, 3140–3145.
- 28. Miller T, Prager R, Rabsch W ve ark. (2010): Epidemiological relationship between Salmonella Infantis isolates of human and broiler origin. Lohmann Information, 45, 27.
- 29. Noda T, Murakami K, Asai T ve ark. (2011): Multi-locus sequence typing of Salmonella enterica subsp. enterica serovar Enteritidis strains in Japan between 1973 and 2004. Acta Vet Scand, 53,1.
- 30. Ranjbar R, Elhaghi P, Shokoohizadeh L (2016): Multilocus Sequence Typing of the Clinical Isolates of Salmonella Enterica Serovar Typhimurium in Tehran Hospitals. IJMS, 1-6.
- 31. Saitou N, Nei M (1987): The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol, 4, 406-425.
- 32. Tamura K (1992): Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Mol Biol Evol, 9, 678-687.
- 33. Taylor JW, Fisher MC (2003): Fungal Multilocus Sequence Typing-it’s not just For bacteria. Curr Op In Microbiol, 6, 351-356.
- 34. Torpdahl MIA, Skov MN, Sandvang D ve ark. (2005): Genotypic characterization of Salmonella by Multilocus Sequence Typing, Pulsed-Field Gel Electropresis and Amplified Fragment Length Polymorphism. J Microbiol Meth, 63, 173-184.
- 35. University Of Oxford (2010): Multi Locus Sequence Typing. http://pubmlst.org/. (5 Nisan 2017)
- 36. Wattiau P, Boland C, Bertrand S (2011): Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives. Appl Environ Microbiol, 7881- 7882
Kanatlı kökenli Salmonella Infantis suşlarının multilokus dizi tiplendirmesi ile filogenetik analizi
Öz
Bu çalışmada broyler tavuk kümeslerinin altlık, toz, çevresel, kemirici kapanları, yem ve su örneklerinden izole edilen 20
adet Salmonella Infantis suşunun multilokus dizi tiplendirme (MLST) ile tiplendirilmesi amaçlandı. Sekans tipleri (ST) ve serotipler
arasındaki evrimsel ilişkiyi göstermek amacıyla yapılan filogenetik analizde, 6 farklı serotip çalışmaya dahil edildi. Her bir suşa ait 7
housekeeping gen üzerinden gerçekleştirilen MLST analizi sonucunda tüm S. Infantis suşları ST32 bulundu ve Türkiye’de S. Infantis
için baskın sekans tipi olabileceği sonucuna varıldı. S. Enteritidis ST11, S. Typhimurium ST19, S. Hadar ST33, S. Agona ST13, S.
Mbandaka ST413 ve S. Coeln ST2015 bulundu. S. Agona, S. Mbandaka ve S. Coeln serotipleri Türkiye’de ilk kez bu çalışmada, MLST
ile tiplendirildi. İlk kez bu çalışma ile ST2015 için serotip bilgisi S. Coeln olarak MLST veritabanına girildi.
Anahtar Kelimeler
Filogenetik ağaç Housekeeping gen MLST Salmonella Infantis sekans tipi
Kaynakça
- 1. Acar S, Bulut E, Durul B ve ark. (2017): Phenotyping and genetic characterization of Salmonella enterica isolates from Turkey revealing arise of different features specific to geography. Int J Food Micro, 241, 98-107.
- 2. Achtman M, Wain J, Weil FX ve ark. (2012): Multilocus Sequence Typing as a replacement for serotyping in Salmonella enterica. Plos Pathog, 8, 15-16.
- 3. Almeida F, Pitondo-Sılva A, Aparecida OM ve ark. (2013): Molecular epidemiology and virulence markers of Salmonella Infantis isolated over 25 years in São Paulo State, Brazil. Infect Genet Evol, 19, 145-151.
- 4. Andrei A, Zervos MJ (2006): The application of molecular techniques to the study of hospital infection. Arch Pathol Lab Med, 130, 662-668.
- 5. Antunes P, Mourão J, Machado J ve ark. (2011): First description of qnrS1 IncN plasmid in a ST11 Salmonella Enteritidis clinical isolate from Portugal. Diagn Micr Infec Dis, 69, 463–465.
- 6. Bado I, García-Fulgueiras V, Cordeiro NF ve ark. (2012): First Human Isolate of Salmonella enterica Serotype Enteritidis Harboring blaCTX-M-14 in South America. Antimicrob Agents Ch, 56, 2132-2134.
- 7. Cai Y, Tao J, Jiao Y ve ark. (2016): Phenotypic characteristics and genotypic correlation between Salmonella isolates from a slaughterhouse and retail markets in Yangzhou, China. Int J Food Microbiol, 222, 5664.
- 8. Carattoli A, Filetici E, Villa L ve ark. (2002): Antibiotic Resistance Genes and Salmonella Genomic Island 1 in Salmonella enterica Serovar Typhimurium Isolated in Italy. Antimicrob Agents Ch, 46, 2821–2828.
- 9. David M, Aanensen DM, Spratt BG (2005): The Multilocus Sequence Typing Network: mlst.net. Nucl Acids Res, 33, 772-733.
- 10. Dione M (2010): Epidemiology of Non-Typhoidal Salmonella (Nts) in Humans and Animals in the Gambia and Senegal. Tropıcultura, 28, 253-256.
- 11. Durul B, Acar S, Bulut E ve ark. (2015): Subtyping of Salmonella food isolates suggests the geographic clustering of serotype Telaviv. Foodborne Pathog Dis, 12, 1-4.
- 12. EFSA (2012): Scientific Opinion of the Panel on Biological Hazards on a request from the European Commission on special measures to reduce the risk for consumers through Salmonella in table eggs-e.g. cooling of table eggs. EFSA J, 957, 1-19.
- 13. Feasey NA, Dougan G, Kingsley RA ve ark. (2012): Invasive non-typhoidal Salmonella disease: an emerging and neglected tropical disease in Africa. Lancet, 379, 2489–2499.
- 14. Felsenstein J (1985): Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
- 15. Ghaderi R, Tadayon K, Khaki P ve ark. (2015): Iranian clonal population of Salmonella enterica serovar Enteritidis, characterized by multi-locus sequence typing (MLST) Method. I J M, 7, 251-259.
- 16. Grimont PAD, Weill FX. (2007). Antigenic formulae of the Salmonella serovars. Institut Pasteur, 9, 15-166.
- 17. Günel E, Kılıc G, Bulut E ve ark. (2015): Salmonella surveillance on fresh produce in retail in Turkey. Int J Food Micro, 199, 72-77.
- 18. Ho YN, Chou MY, Tsai HC ve ark. (2017): Empirical testing of modified Salmonella MLST in aquatic environmental samples by in silico analysis. Sci Total Environ, 581-582, 378–380.
- 19. Hoszowski A, Zajac M, Lalak A ve ark. (2016): Fifteen years of successful spread of Salmonella enterica serovar Mbandaka clone ST413 in Poland and its public health consequences. Ann Agr Env Med, 23, 237–241.
- 20. Imperial College (2007): Multi Locus Sequence Typing. http://www.mlst.net/. (5 Nisan 2017)
- 21. ISO 6579 (2002): General guidance on methods for the detection of Salmonella. International organisation for standardization. Microbiology, 4, 1-19.
- 22. Kidgell C, Reichard U, Wain J ve ark. (2002): Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol, 2, 39–40.
- 23. Kotetishvili M, Stine O, Kreger A, Morris Jg, Sulakvelidze A (2002): Multilocus sequence typing for characterization of clinical and environmental salmonella strains. J Clin Microbiol, 40, 1626-1635.
- 24. Kumar S, Stecher G, Tamura K (2016): MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol, 33, 1870-1874.
- 25. Li YC, Pan ZM, Kang XL ve ark. (2014): Prevalence, Characteristics, and Antimicrobial Resistance Patterns of Salmonella in Retail Pork in Jiangsu Province, Eastern China. J Food Protect, 77, 236–245.
- 26. Lublin A, Maler I, Mechani S ve ark. (2015): Survival of Salmonella enterica serovar Infantis on and within stored table eggs. J Food Protect, 78, 287-292.
- 27. Maiden MCJ, Bygraves A, Feil E ve ark. (1998): Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci, 95, 3140–3145.
- 28. Miller T, Prager R, Rabsch W ve ark. (2010): Epidemiological relationship between Salmonella Infantis isolates of human and broiler origin. Lohmann Information, 45, 27.
- 29. Noda T, Murakami K, Asai T ve ark. (2011): Multi-locus sequence typing of Salmonella enterica subsp. enterica serovar Enteritidis strains in Japan between 1973 and 2004. Acta Vet Scand, 53,1.
- 30. Ranjbar R, Elhaghi P, Shokoohizadeh L (2016): Multilocus Sequence Typing of the Clinical Isolates of Salmonella Enterica Serovar Typhimurium in Tehran Hospitals. IJMS, 1-6.
- 31. Saitou N, Nei M (1987): The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol, 4, 406-425.
- 32. Tamura K (1992): Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Mol Biol Evol, 9, 678-687.
- 33. Taylor JW, Fisher MC (2003): Fungal Multilocus Sequence Typing-it’s not just For bacteria. Curr Op In Microbiol, 6, 351-356.
- 34. Torpdahl MIA, Skov MN, Sandvang D ve ark. (2005): Genotypic characterization of Salmonella by Multilocus Sequence Typing, Pulsed-Field Gel Electropresis and Amplified Fragment Length Polymorphism. J Microbiol Meth, 63, 173-184.
- 35. University Of Oxford (2010): Multi Locus Sequence Typing. http://pubmlst.org/. (5 Nisan 2017)
- 36. Wattiau P, Boland C, Bertrand S (2011): Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives. Appl Environ Microbiol, 7881- 7882
Toplam 36 adet kaynakça vardır.
Ayrıntılar
| Birincil Dil | İngilizce |
|---|---|
| Konular | Veteriner Cerrahi |
| Bölüm | Araştırma Makalesi |
| Yazarlar | |
| Yayımlanma Tarihi | 9 Kasım 2018 |
| Yayımlandığı Sayı | Yıl 2018 |