Characterization of the complete mitogenomic and phylogenetic of the Columba livia breed Şebap pigeon
Öz
Gen kaynaklarının korunmasına odaklanan çalışmaların ilk aşaması, mevcut ırkların fenotipik ve genetik karakterizasyonunu içermektedir. Genetik analizler için oldukça uygun olan mitokondriyal DNA (mtDNA) seviyesindeki farklılıkların açıklanması, yerel ırklar arasında genetik mesafelerin hesaplanabilmesini, evrimsel analizler aracılığıyla potansiyel evcilleştirme merkezlerinin belirlenebilmesini ve ırklar arasındaki akrabalık ilişkilerini gösteren filogeni ağaçlarının oluşturulabilmesini mümkün kılar. Şanlıurfa, geleneksel güvercin yetiştiriciliğinin uzun bir geçmişe sahip olması ve güvercin evcilleştirmesi merkezlerinden biri olması nedeniyle güvercin yetiştiriciliğinde önem taşımaktadır. Bu çalışma, Şanlıurfa iline özgü güvercin ırklarından Şebap güvercinini tüm mtDNA dizisi açısından karakterize etmeyi amaçlamaktadır.
Şebap güvercininin mitokondriyal genomu, 17,232 bp boyutunda olup, 13 Protein-Kodlayan Gen (PCG), iki Ribozomal RNA (rRNA) ve 22 Transfer RNA (tRNA) içermektedir. Genel mitokondriyal genom kompozisyonu, sırasıyla %29.6 A, %24.5 T, %31.2 C ve %14.7 G içermekte olup, belirgin bir şekilde %54.1 A-T zenginliğine sahiptir. Özellikle, ND6 L zincirinde kodlanırken diğerleri H zincirinde kodlanmaktadır.
Anahtar Kelimeler
Şanlıurfa pigeon breeding mitochondrial DNA genetic characterization evolutionary analysis phylogeny tree
Etik Beyan
This research was approved by the Harran University Animal Experiments Local Ethics Committee (Approval no: 2021.005.04).
Destekleyen Kurum
Harran University Project Office
Proje Numarası
241 21190
Teşekkür
We would like to thank Şebap Pigeon Association and the valuable pigeon-loving breeders.
Kaynakça
- Atasoy F, Erdem E, Hacan ÖG (2013): Determination of morphological characteristics of tumbler pigeons in province of Ankara (Columba livia domestica). Ankara Univ Vet Fak Derg, 60, 135-143.
- Balog K, Menghwar LC, Kusza S, et al (2023): Investigating the Genetic Diversity of Squab Pigeon Breeds using Mitochondrial DNA COI Region. Scientific Papers Animal Science and Biotechnologies, 56, 29-29.
- Biray B (2019): Mitochondrial DNA analyses of domestic pigeon breeds (Columba Livia domestica) in Turkey (Master's thesis, Middle East Technical University).
- Çelik R (2023): Morphological characteristics of Şebap pigeons (Columba Livia Domestica). J İstanbul Vet Sci, 7, 27-33.
- Erdem E, Özbaşer FT, Gürcan EK, et al (2021): The morphological and morphometric characteristics of Alabadem pigeons. Turkish J Vet Anim, 45, 372-379.
- Haddrath O, Baker AJ (2001): Complete mitochondrial DNA geonome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis. Proceedings of the Royal Society of London. Series B: Biological Sciences, 268, 939-945.
- He WX, Jia JF (2015): The complete mitochondrial genome of the Jacobin pigeon (Columba livia breed Jacobin). Mitochondrial DNA, 26, 493-494.
- Hiendleder S, Kaupe B, Wassmut R, et al (2002): Molecular analysis of wild and domestic sheep qestions current nomenclature and provides evidence for domestication from two different subspecies. Proceedings of The Royal Society of London, 269, 893-904.
- Integrated DNA Technologies OligoAnalyzer (RRID:SCR_001363). Accessed [03.20.2022]. https://www.idtdna.com/pages/tools/oligoanalyzer.
- Kan XZ, Li XF, Zhang LQ, et al (2010): Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae). Genet Mol Res 9, 1234-1249.
- Katoh K, Misawa K, Kuma K, et al (2002): MAFFT: Anovel method for rapid multiple sequence alignment based on fastFourier transform. Nucl Acids Res, 30, 3059-3066.
- Kearse M, Moir R, Wilson A, et al (2012): Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647-1649.
- Khan HA, Arif IA (2013): COI barcodes and phylogeny of doves (Columbidae family). Mitochondrial DNA, 24, 689-696.
- Kürkçüoğlu SS (2011): Şanlıurfa Geleneksel Mimarisinde Kuş Takaları (Kuş Evleri). Şanlıurfa Kültür Sanat Tarih ve Turizm Dergisi, 11, 41-43.
- Li CH, Shi W, Shi WY (2015): Mitochondrial genome sequence of Egyptian swift Rock Pigeon (Columba livia breed Egyptian swift). Mitochondrial DNA, 26, 479-480.
- Liu HY, Sun C H, Zhu Y, et al (2020): Complete mitogenomic and phylogenetic characteristics of the speckled wood-pigeon (Columba hodgsonii). Molecular Biology Reports, 47, 3567-3576.
- Özbaşer FT, Atasoy F, Erdem E, et al (2016): Some morphological characteristics of squadron flyer pigeons (Columba livia domestica). Ankara Univ Vet Fak Derg, 63, 171-177.
- Saitou N, Nei M (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
- Sambrook J, Fritsch EF, Maniatis T (1989): Molecular Cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, New York.
- Shapiro MD, Kronenberg Z, Li C, et al (20c): Genomic diversity and evolution of the head crest in the rock pigeon. Science, 339, 1063-1067.
- Troy CS, Machugh DE, Bailey JF, et al (2001): Genetic evidence for Near-Eastern origins of European cattle. Nature, 410, 1088-1091.
- Untergasser, A., Nijveen, H., Rao, X., et al (2007): Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Research, 35, 71-74.
- Wu H, Liu BG, Hu GZ, et al (2016): The complete mitochondrial genome of Archangel pigeon. Mitochondrial DNA Part A, 27, 865-866.
- Zhang RH, He WX, Xu T (2015): Characterization of the complete mitochondrial genome of the king pigeon (Columba livia breed king). Mitochondrial DNA, 26, 491-492.
Öz
Proje Numarası
241 21190
Kaynakça
- Atasoy F, Erdem E, Hacan ÖG (2013): Determination of morphological characteristics of tumbler pigeons in province of Ankara (Columba livia domestica). Ankara Univ Vet Fak Derg, 60, 135-143.
- Balog K, Menghwar LC, Kusza S, et al (2023): Investigating the Genetic Diversity of Squab Pigeon Breeds using Mitochondrial DNA COI Region. Scientific Papers Animal Science and Biotechnologies, 56, 29-29.
- Biray B (2019): Mitochondrial DNA analyses of domestic pigeon breeds (Columba Livia domestica) in Turkey (Master's thesis, Middle East Technical University).
- Çelik R (2023): Morphological characteristics of Şebap pigeons (Columba Livia Domestica). J İstanbul Vet Sci, 7, 27-33.
- Erdem E, Özbaşer FT, Gürcan EK, et al (2021): The morphological and morphometric characteristics of Alabadem pigeons. Turkish J Vet Anim, 45, 372-379.
- Haddrath O, Baker AJ (2001): Complete mitochondrial DNA geonome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis. Proceedings of the Royal Society of London. Series B: Biological Sciences, 268, 939-945.
- He WX, Jia JF (2015): The complete mitochondrial genome of the Jacobin pigeon (Columba livia breed Jacobin). Mitochondrial DNA, 26, 493-494.
- Hiendleder S, Kaupe B, Wassmut R, et al (2002): Molecular analysis of wild and domestic sheep qestions current nomenclature and provides evidence for domestication from two different subspecies. Proceedings of The Royal Society of London, 269, 893-904.
- Integrated DNA Technologies OligoAnalyzer (RRID:SCR_001363). Accessed [03.20.2022]. https://www.idtdna.com/pages/tools/oligoanalyzer.
- Kan XZ, Li XF, Zhang LQ, et al (2010): Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae). Genet Mol Res 9, 1234-1249.
- Katoh K, Misawa K, Kuma K, et al (2002): MAFFT: Anovel method for rapid multiple sequence alignment based on fastFourier transform. Nucl Acids Res, 30, 3059-3066.
- Kearse M, Moir R, Wilson A, et al (2012): Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647-1649.
- Khan HA, Arif IA (2013): COI barcodes and phylogeny of doves (Columbidae family). Mitochondrial DNA, 24, 689-696.
- Kürkçüoğlu SS (2011): Şanlıurfa Geleneksel Mimarisinde Kuş Takaları (Kuş Evleri). Şanlıurfa Kültür Sanat Tarih ve Turizm Dergisi, 11, 41-43.
- Li CH, Shi W, Shi WY (2015): Mitochondrial genome sequence of Egyptian swift Rock Pigeon (Columba livia breed Egyptian swift). Mitochondrial DNA, 26, 479-480.
- Liu HY, Sun C H, Zhu Y, et al (2020): Complete mitogenomic and phylogenetic characteristics of the speckled wood-pigeon (Columba hodgsonii). Molecular Biology Reports, 47, 3567-3576.
- Özbaşer FT, Atasoy F, Erdem E, et al (2016): Some morphological characteristics of squadron flyer pigeons (Columba livia domestica). Ankara Univ Vet Fak Derg, 63, 171-177.
- Saitou N, Nei M (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
- Sambrook J, Fritsch EF, Maniatis T (1989): Molecular Cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, New York.
- Shapiro MD, Kronenberg Z, Li C, et al (20c): Genomic diversity and evolution of the head crest in the rock pigeon. Science, 339, 1063-1067.
- Troy CS, Machugh DE, Bailey JF, et al (2001): Genetic evidence for Near-Eastern origins of European cattle. Nature, 410, 1088-1091.
- Untergasser, A., Nijveen, H., Rao, X., et al (2007): Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Research, 35, 71-74.
- Wu H, Liu BG, Hu GZ, et al (2016): The complete mitochondrial genome of Archangel pigeon. Mitochondrial DNA Part A, 27, 865-866.
- Zhang RH, He WX, Xu T (2015): Characterization of the complete mitochondrial genome of the king pigeon (Columba livia breed king). Mitochondrial DNA, 26, 491-492.
Ayrıntılar
| Birincil Dil | İngilizce |
|---|---|
| Konular | Zootekni, Genetik ve Biyoistatistik |
| Bölüm | Araştırma Makalesi |
| Yazarlar | |
| Proje Numarası | 241 21190 |
| Erken Görünüm Tarihi | 13 Aralık 2024 |
| Yayımlanma Tarihi | |
| Gönderilme Tarihi | 29 Ocak 2024 |
| Kabul Tarihi | 26 Eylül 2024 |
| Yayımlandığı Sayı | Yıl 2024Accepted Papers |