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Draft Genome Sequence of Staphylococcus felis HARRANVET Strain

Yıl 2021, Cilt: 6 Sayı: 2, 78 - 81, 31.08.2021
https://doi.org/10.24880/maeuvfd.884932

Öz

Staphylococcus felis is one of staphylococci residing on skin of cats, and has been increasingly reported as a potential facultative pathogen. A recently isolated S. felis (named S. felis HARRANVET strain) from necrotizing fasciitis case of a cat was characterized using whole genome sequencing (WGS), and assembled genome was in silico screened for putative virulence and antimicrobial resistance genes. The isolate was pan-susceptible to all antimicrobials tested, indicated absence of resistance genes. A limited number of virulence genes associated with adhesion was found. For the first time, in Turkey, the draft genome of S. felis was obtained and made publicly accessible.

Kaynakça

  • 1. Becker K, Heilmann C, Peters G. Coagulase-negative staphylococci. Clin Microbiol Rev, 2014; 27(4): 870-926.
  • 2. Qekwana DN, Sebola D, Oguttu JW, Odoi A. Antimicrobial resistance patterns of Staphylococcus species isolated from cats presented at the veterinary academic hospital in South Africa. BMC Vet Res, 2017; 13:286.
  • 3. Bierowiec K, Korzeniowska-Kowal A, Wzorek A, Rypuła K, Gamian A. Prevalence of Staphylococcus Species Colonization in Healthy and Sick Cats. Biomed Res Int, 2019; 2019:4360525.
  • 4. Kwaszewska A, Lisiecki P, Szemraj M, Szewczyk EM. Animal Staphylococcus felis with the potential to infect human skin. Med Dosw Mikrobiol, 2015; 67:69-78.
  • 5. Litster A, Moss SM, Honnery M, Rees B, Trott DJ. Prevalence of bacterial species in cats with clinical signs of lower urinary tract disease: Recognition of Staphylococcus felis as a possible feline urinary tract pathogen. Vet Microbiol, 2007; 121(1-2):182–188.
  • 6. Koneman EW, Allen SD, Janda WM, Schreckenberger PC, Winn WC. The Gram-Positive Cocci. In, Color Atlas and Textbook of Diagnostic Microbiology. 5th ed., Lippincott Raven Publishers, Philadelphia; 1997, p. 539-565.
  • 7. CLSI. Performance Standards for Antimicrobial Susceptibility Testing; Twenty-Second Informational Supplement, CLSI document M100-S22, Wayne, PA: Clinical and Laboratory Standart Institute, 2012.
  • 8. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol, 2012; 19:455-477.
  • 9. Langmead B, Salzberg S: Fast gapped-read alignment with Bowtie 2. Nature Methods, 2012; 9:357-359.
  • 10. Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother, 2012; 67:2640–2644.
  • 11. Joensen KG, Scheutz F, Lund O, Hasman H, Kaas RS, Nielsen EM, et al. Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli. J Clin Microbiol, 2014; 52:1501–1510.
  • 12. Brettin T, Davis JJ, Disz T, EdwardsRA, GerdesS, OlsenGJ, et al. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep, 2015; 5:8365.
  • 13. Worthing K, Pang S, Trott DJ, Abraham S, Coombs GW, Jordan D, et al. Characterisation of Staphylococcus felis isolated from cats using whole genome sequencing. Vet Microbiol, 2018; 222:98-104.
  • 14. Burke FM, McCormack N, Rindi S, Speziale P, Foster JF. Fibronectin-binding protein B variation in Staphylococcus aureus. BMC Microbiol, 2010; 10:160.
  • 15. Porayath C, Suresh MK, Biswas R, Nair BG, Mishra N, Pal S. Autolysin mediated adherence of Staphylococcus aureus with Fibronectin, Gelatin and Heparin. Int J Biol Macromol. 2018; 110:179-184.
Yıl 2021, Cilt: 6 Sayı: 2, 78 - 81, 31.08.2021
https://doi.org/10.24880/maeuvfd.884932

Öz

Kaynakça

  • 1. Becker K, Heilmann C, Peters G. Coagulase-negative staphylococci. Clin Microbiol Rev, 2014; 27(4): 870-926.
  • 2. Qekwana DN, Sebola D, Oguttu JW, Odoi A. Antimicrobial resistance patterns of Staphylococcus species isolated from cats presented at the veterinary academic hospital in South Africa. BMC Vet Res, 2017; 13:286.
  • 3. Bierowiec K, Korzeniowska-Kowal A, Wzorek A, Rypuła K, Gamian A. Prevalence of Staphylococcus Species Colonization in Healthy and Sick Cats. Biomed Res Int, 2019; 2019:4360525.
  • 4. Kwaszewska A, Lisiecki P, Szemraj M, Szewczyk EM. Animal Staphylococcus felis with the potential to infect human skin. Med Dosw Mikrobiol, 2015; 67:69-78.
  • 5. Litster A, Moss SM, Honnery M, Rees B, Trott DJ. Prevalence of bacterial species in cats with clinical signs of lower urinary tract disease: Recognition of Staphylococcus felis as a possible feline urinary tract pathogen. Vet Microbiol, 2007; 121(1-2):182–188.
  • 6. Koneman EW, Allen SD, Janda WM, Schreckenberger PC, Winn WC. The Gram-Positive Cocci. In, Color Atlas and Textbook of Diagnostic Microbiology. 5th ed., Lippincott Raven Publishers, Philadelphia; 1997, p. 539-565.
  • 7. CLSI. Performance Standards for Antimicrobial Susceptibility Testing; Twenty-Second Informational Supplement, CLSI document M100-S22, Wayne, PA: Clinical and Laboratory Standart Institute, 2012.
  • 8. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol, 2012; 19:455-477.
  • 9. Langmead B, Salzberg S: Fast gapped-read alignment with Bowtie 2. Nature Methods, 2012; 9:357-359.
  • 10. Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother, 2012; 67:2640–2644.
  • 11. Joensen KG, Scheutz F, Lund O, Hasman H, Kaas RS, Nielsen EM, et al. Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli. J Clin Microbiol, 2014; 52:1501–1510.
  • 12. Brettin T, Davis JJ, Disz T, EdwardsRA, GerdesS, OlsenGJ, et al. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep, 2015; 5:8365.
  • 13. Worthing K, Pang S, Trott DJ, Abraham S, Coombs GW, Jordan D, et al. Characterisation of Staphylococcus felis isolated from cats using whole genome sequencing. Vet Microbiol, 2018; 222:98-104.
  • 14. Burke FM, McCormack N, Rindi S, Speziale P, Foster JF. Fibronectin-binding protein B variation in Staphylococcus aureus. BMC Microbiol, 2010; 10:160.
  • 15. Porayath C, Suresh MK, Biswas R, Nair BG, Mishra N, Pal S. Autolysin mediated adherence of Staphylococcus aureus with Fibronectin, Gelatin and Heparin. Int J Biol Macromol. 2018; 110:179-184.
Toplam 15 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Sağlık Kurumları Yönetimi
Bölüm Kısa Bildiri
Yazarlar

Özkan Aslantaş 0000-0003-0407-8633

Oktay Keskin 0000-0002-5977-7872

Kaan Büyükaltay 0000-0001-6074-8940

Ayfer Güllü Yücetepe 0000-0002-9842-3305

Yayımlanma Tarihi 31 Ağustos 2021
Gönderilme Tarihi 22 Şubat 2021
Yayımlandığı Sayı Yıl 2021 Cilt: 6 Sayı: 2

Kaynak Göster

APA Aslantaş, Ö., Keskin, O., Büyükaltay, K., Güllü Yücetepe, A. (2021). Draft Genome Sequence of Staphylococcus felis HARRANVET Strain. Veterinary Journal of Mehmet Akif Ersoy University, 6(2), 78-81. https://doi.org/10.24880/maeuvfd.884932