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Yıl 2022, Cilt: 1 Sayı: 2, 42 - 58, 31.12.2022

İlker Şahinkesen Fırat Doğan Seval Bılge Dagalp

Öz

Kaynakça

  • Aguilar, P. V., Barrett, A. D., Saeed, M. F., Watts, D. M., Russell, K., Guevara, C., & Kochel, T. J. (2011). Iquitos virus: a novel reassortant Orthobunyavirus associated with human illness in Peru. Plos Neglected Tropical Diseases, 5(9), e1315. https://doi.org/10.1371/journal.pntd.0001315
  • Amroun, A., Priet, S., de Lamballerie, X., & Quérat, G. (2017). Bunyaviridae RdRps: structure, motifs, and RNA synthesis machinery. Critical Reviews in Microbiology, 43(6), 753-778. https://doi.org/10.1080/1040841X.2017.1307805
  • Barr, J. N., Elliott, R. M., Dunn, E. F., & Wertz, G. W. (2003). Segment-specific terminal sequences of Bunyamwera bunyavirus regulate genome replication. Virology, 311, 326–338. https://doi.org/10.1016/S0042-6822(03)00130-2
  • Beaty, B. J., Bishop, D. H., Gay, M., & Fuller, F. (1983). Interference between bunyaviruses in Aedes triseriatus mosquitoes. Virology, 127, 83-90. https://doi.org/10.1016/0042-6822(83)90373-2
  • Beaty, B. J., Holterman, M., Tabachnick, W., Shope, R. E., Rozhon, E. J., & Bishop, D. H. (1981). Molecular basis of bunyavirus transmission by mosquitoes: role of the middle-sized RNA segment. Science, 211(4489), 1433-1435. https://doi.org/10.1126/science.6781068
  • Beaty, B., & Calisher, C. (1991). Bunyaviridae - natural history. Current Topics in Microbiology and Immunology, 169, 27-78. https://doi.org/10.1007/978-3-642-76018-1_2
  • Blitvich, B. J., Saiyasombat, R., Dorman, K. S., Garcia-Rejon, J. E., Farfan-Ale, J. A., & Lorono-Pino, M. A. (2012). Sequence and phylogenetic data indicate that an orthobunyavirus recently detected in the Yucatan Peninsula of Mexico is a novel reassortant of Potosi and Cache Valley viruses. Archives of Virology, 157(6), 1199-1204.
  • Borucki, M. K., Kempf, B. J., Blitvich, B. J., Blair, C. D., & Beaty, B. J. (2002). La Crosse virus: Replication in vertebrate and invertebrate hosts. Microbes and Infection, 4, 341–350. https://doi.org/10.1016/S1286-4579(02)01547-2
  • Bowden, T. A., Bitto, D., McLees, A., Yeromonahos, C., Elliott, R. M., & Huiskonen, J. T. (2013). Orthobunyavirus ultrastructure and the curious tripodal glycoprotein spike. PLoS Pathogens, 9(5), e1003374. https://doi.org/10.1371/journal.ppat.1003374
  • Bréard, E., Lara, E., Comtet, L., Viarouge, C., Doceul, V., Desprat, A., & Zientara, S. (2013). Validation of a commercially available indirect ELISA using a nucleocapside recombinant protein for detection of Schmallenberg virus antibodies. Plos One, 8(1), e53446. https://doi.org/10.1371/journal.pone.0053446
  • Briese, T., Bird, B., Kapoor, V., Nichol, S. T., & Lipkin, W. I. (2006). Batai and Ngari viruses: M segment reassortment and association with severe febrile disease outbreaks in East Africa. Journal of Virology, 80, 5627-5630. https://doi.org/10.1128/JVI.02448-05
  • Briese, T., Calisher, C. H., & Higgs, S. (2013). Viruses of the family Bunyaviridae: Are all available isolates reassortants?. Virology, 446(1-2), 207-216. https://doi.org/10.1016/j.virol.2013.07.030
  • Calisher, C.H. (1983). Taxonomy, classification, and geographic distribution of california serogroup bunyaviruses. Progress in Clinical and Biological Research, 123, 1-16.
  • Carlton-Smith, C., & Elliott, R. M. (2012). Viperin, MTAP44 and protein kinase R contribute to the interferon-induced inhibition of Bunyamwera orthobunyavirus replication. Journal of Virology, 86, 11548-11557. https://doi.org/10.1128/JVI.01773-12
  • Chowdhary, R., Street, C., da Rosa, A. T., Nunes, M. R., Tee, K. K., Hutchison, S. K., & Briese, T. (2012). Genetic characterization of the Wyeomyia group of orthobunyaviruses and their phylogenetic relationships. Journal of General Virology, 93(5), 1023-1034. https://doi.org/10.1099/vir.0.039479-0
  • Collao, X., Palacios, G., de Ory, F., Sanbonmatsu, S., Pérez-Ruiz, M., Navarro, J. M., & Sánchez-Seco, M. P. (2010). Granada virus: a natural phlebovirus reassortant of the sandfly fever Naples serocomplex with low seroprevalence in humans. The American Journal of Tropical Medicine and Hygiene, 83(4), 760. https://doi.org/10.4269/ajtmh.2010.09-0697
  • Coupeau, D., Clain,e F., Wiggers, L., Kirschvink, N., & Muylkens, B. (2013). In vivo and in vitro identification of a hypervariable region in Schmallenberg virus. Journal of General Virology, 94, 1168- 1174. https://doi.org/10.1099/vir.0.051821-0
  • Eifan, S., Schnettler, E., Dietrich, I., Kohl, A., & Blomstrom, A. L. (2013). Non-structural proteins of arthropod-borne bunyaviruses: Roles and functions. Viruses, 5, 2447–2468. https://doi.org/10.3390/v5102447
  • Elbeaino, T., Digiaro, M., & Martelli, G.P. (2009). Complete nucleotide sequence of four RNA segments of fig mosaic virus. Archives of Virology, 154, 1719-1727.
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Current classification of Peribunyaviridae family: genetic diversity and contributing factors

Yıl 2022, Cilt: 1 Sayı: 2, 42 - 58, 31.12.2022

İlker Şahinkesen Fırat Doğan Seval Bılge Dagalp

Öz

The first detection of Bunyamweravirus in 1943 and many other antigenically related viruses identified in the following years led to the formal establishment of the Bunyaviridae family in 1975. This family became the Bunyavirales order in 2017 following proposals submitted to International Committee on Taxonomy of Viruses when the establishment of the Peribunyaviridae family was also approved for the Orthobunyavirus and Herbertvirus genera. The Peribunyaviridae family includes the Orthobunyavirus, Herbertvirus, Pacuvirus, and Shangavirus genera. Many types of viruses within this family can infect humans, mammals, plants, and insects. However, many of these viruses are transmitted by arthropod vectors without requiring mammals for their viability, which propose that Peribunyaviruses might have initially evolved as viruses that only infect insects. The leading factors contributing to genetic diversity in the Peribunyaviridae family are mutations and genetic reassortment. Mutations are generally detected in the M segment, which encodes the surface glycoproteins that enable viruses to avoid the immune response.

Anahtar Kelimeler

Classification genetic reassortment mutation Peribunyaviridae

Kaynakça

  • Aguilar, P. V., Barrett, A. D., Saeed, M. F., Watts, D. M., Russell, K., Guevara, C., & Kochel, T. J. (2011). Iquitos virus: a novel reassortant Orthobunyavirus associated with human illness in Peru. Plos Neglected Tropical Diseases, 5(9), e1315. https://doi.org/10.1371/journal.pntd.0001315
  • Amroun, A., Priet, S., de Lamballerie, X., & Quérat, G. (2017). Bunyaviridae RdRps: structure, motifs, and RNA synthesis machinery. Critical Reviews in Microbiology, 43(6), 753-778. https://doi.org/10.1080/1040841X.2017.1307805
  • Barr, J. N., Elliott, R. M., Dunn, E. F., & Wertz, G. W. (2003). Segment-specific terminal sequences of Bunyamwera bunyavirus regulate genome replication. Virology, 311, 326–338. https://doi.org/10.1016/S0042-6822(03)00130-2
  • Beaty, B. J., Bishop, D. H., Gay, M., & Fuller, F. (1983). Interference between bunyaviruses in Aedes triseriatus mosquitoes. Virology, 127, 83-90. https://doi.org/10.1016/0042-6822(83)90373-2
  • Beaty, B. J., Holterman, M., Tabachnick, W., Shope, R. E., Rozhon, E. J., & Bishop, D. H. (1981). Molecular basis of bunyavirus transmission by mosquitoes: role of the middle-sized RNA segment. Science, 211(4489), 1433-1435. https://doi.org/10.1126/science.6781068
  • Beaty, B., & Calisher, C. (1991). Bunyaviridae - natural history. Current Topics in Microbiology and Immunology, 169, 27-78. https://doi.org/10.1007/978-3-642-76018-1_2
  • Blitvich, B. J., Saiyasombat, R., Dorman, K. S., Garcia-Rejon, J. E., Farfan-Ale, J. A., & Lorono-Pino, M. A. (2012). Sequence and phylogenetic data indicate that an orthobunyavirus recently detected in the Yucatan Peninsula of Mexico is a novel reassortant of Potosi and Cache Valley viruses. Archives of Virology, 157(6), 1199-1204.
  • Borucki, M. K., Kempf, B. J., Blitvich, B. J., Blair, C. D., & Beaty, B. J. (2002). La Crosse virus: Replication in vertebrate and invertebrate hosts. Microbes and Infection, 4, 341–350. https://doi.org/10.1016/S1286-4579(02)01547-2
  • Bowden, T. A., Bitto, D., McLees, A., Yeromonahos, C., Elliott, R. M., & Huiskonen, J. T. (2013). Orthobunyavirus ultrastructure and the curious tripodal glycoprotein spike. PLoS Pathogens, 9(5), e1003374. https://doi.org/10.1371/journal.ppat.1003374
  • Bréard, E., Lara, E., Comtet, L., Viarouge, C., Doceul, V., Desprat, A., & Zientara, S. (2013). Validation of a commercially available indirect ELISA using a nucleocapside recombinant protein for detection of Schmallenberg virus antibodies. Plos One, 8(1), e53446. https://doi.org/10.1371/journal.pone.0053446
  • Briese, T., Bird, B., Kapoor, V., Nichol, S. T., & Lipkin, W. I. (2006). Batai and Ngari viruses: M segment reassortment and association with severe febrile disease outbreaks in East Africa. Journal of Virology, 80, 5627-5630. https://doi.org/10.1128/JVI.02448-05
  • Briese, T., Calisher, C. H., & Higgs, S. (2013). Viruses of the family Bunyaviridae: Are all available isolates reassortants?. Virology, 446(1-2), 207-216. https://doi.org/10.1016/j.virol.2013.07.030
  • Calisher, C.H. (1983). Taxonomy, classification, and geographic distribution of california serogroup bunyaviruses. Progress in Clinical and Biological Research, 123, 1-16.
  • Carlton-Smith, C., & Elliott, R. M. (2012). Viperin, MTAP44 and protein kinase R contribute to the interferon-induced inhibition of Bunyamwera orthobunyavirus replication. Journal of Virology, 86, 11548-11557. https://doi.org/10.1128/JVI.01773-12
  • Chowdhary, R., Street, C., da Rosa, A. T., Nunes, M. R., Tee, K. K., Hutchison, S. K., & Briese, T. (2012). Genetic characterization of the Wyeomyia group of orthobunyaviruses and their phylogenetic relationships. Journal of General Virology, 93(5), 1023-1034. https://doi.org/10.1099/vir.0.039479-0
  • Collao, X., Palacios, G., de Ory, F., Sanbonmatsu, S., Pérez-Ruiz, M., Navarro, J. M., & Sánchez-Seco, M. P. (2010). Granada virus: a natural phlebovirus reassortant of the sandfly fever Naples serocomplex with low seroprevalence in humans. The American Journal of Tropical Medicine and Hygiene, 83(4), 760. https://doi.org/10.4269/ajtmh.2010.09-0697
  • Coupeau, D., Clain,e F., Wiggers, L., Kirschvink, N., & Muylkens, B. (2013). In vivo and in vitro identification of a hypervariable region in Schmallenberg virus. Journal of General Virology, 94, 1168- 1174. https://doi.org/10.1099/vir.0.051821-0
  • Eifan, S., Schnettler, E., Dietrich, I., Kohl, A., & Blomstrom, A. L. (2013). Non-structural proteins of arthropod-borne bunyaviruses: Roles and functions. Viruses, 5, 2447–2468. https://doi.org/10.3390/v5102447
  • Elbeaino, T., Digiaro, M., & Martelli, G.P. (2009). Complete nucleotide sequence of four RNA segments of fig mosaic virus. Archives of Virology, 154, 1719-1727.
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  • Goller, K.V., Höper, D., Schirrmeier, H., Mettenleiter,T.C., & Beer, M. (2012). Schmallenberg virus as possible ancestor of Shamonda virus. Emerging Infectious Diseases, 18, 1644–1646. https://doi.org/10.3201/eid1810.120835
  • Hellert, J., Aebischer, A., Wernike, K., Haouz, A., Brocchi, E., Reiche, S., & Rey, F. A. (2019). Orthobunyavirus spike architecture and recognition by neutralizing antibodies. Nature Communications, 10(1), 1-14.
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  • Junglen, S. (2016). Evolutionary origin of pathogenic arthropod-borne viruses – a case study in the family Bunyaviridae. Archives of Virology, 154, 1719-1727. https://doi.org/10.1016/j.cois.2016.05.017
  • Kohl, A., Lowen, A. C., Leonard, V. H. J., & Elliott, R. M. (2006). Genetic elements regulating packaging of the Bunyamwera orthobunyavirus genome. Journal of General Virology, 87, 177-187. https://doi.org/10.1099/vir.0.81227-0
  • Kolakofsky, D., Bellocq, C., & Raju, R. (1987). The translational requirement for La Crosse virus S mRNA synthesis. Cold Spring Harbor Symposia on Quantitative Biology, 52, 373-379. https://doi.org/10.1101/SQB.1987.052.01.043
  • Lappin, D. F., Nakitare, G. W., Palfreyman, J. W., & Elliott, R. M. (1994). Localisation of Bunyamwera bunyavirus G1 glycoprotein to the Golgi requires association with G2 but not NSm. Journal of General Virology, 75, 3441-3451. https://doi.org/10.1099/0022-1317-75-12-3441
  • Li, C.X., Shi, M., Tian, J.H., Lin, X.D., Kang, Y.J., Chen, L.J., Qin, X.C., Xu, J., Holmes, E.C., & Zhang, Y.Z. (2015). Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. Elife, 4, e05378. https://doi.org/10.7554/eLife.05378
  • Mazel-Sanchez, B. & Elliott, R. M. (2012). Attenuation of Bunyamwera orthobunyavirus replication by targeted mutagenesis of genomic UTRs and creation of viable viruses with minimal genome segments. Journal of Virology, 86, 13672-13678. https://doi.org/10.1128/JVI.02253-12
  • Mohamed, M., McLees, A., & Elliott, R. M. (2009). Viruses in the Anopheles A, Anopheles B, and Tete serogroups in the Orthobunyavirus genus (family Bunyaviridae) do not encode an NSs protein. Journal of Virology, 83, 7612-7618. https://doi.org/10.1128/JVI.02080-08
  • Nakitare, G. W., & Elliott, R. M. (1993). Expression of the Bunyamwera virus M genome segment and intracellular localisation of NSm. Virology, 195, 511-520. https://doi.org/10.1006/viro.1993.1402
  • Nunes, M. R., Travassos da Rosa, A. P., Weaver, S. C., Tesh, R. B., & Vasconcelos, P. F. (2005). Molecular epidemiology of group C viruses (Bunyaviridae, Orthobunyavirus) isolated in the Americas. Journal of Virology, 79(16), 10561-10570. https://doi.org/10.1128/JVI.79.16.10561-10570.2005
  • Obijeski, J. F., Bishop, D. H., Murphy, F. A., & Palmer, E. L. (1976). Structural proteins of La Crosse virus. Journal of Virology, 19, 985-997. https://doi.org/10.1128/jvi.19.3.985-997.1976
  • Patterson, J. L., Holloway, B., & Kolakofsky, D. (1984). La Crosse virions contain a primer-stimulated RNA polymerase and a methylated cap-dependent endonuclease. Journal of Virology, 52, 215-222. https://doi.org/10.1128/jvi.52.1.215-222.1984
  • Piet, R., Kalil, B., McLennan, T., Porteous, R., Czieselsky, K., Herbison, A.E. (2018). Dominant neuropeptide cotransmission in kisspeptin-GABA regulation of GnRH neuron firing driving ovulation. Journal of Neuroscience. 38, 6310-6322. https://doi.org/10.1523/JNEUROSCI.0658-18.
  • Randall, R. E., & Goodbourn, S. (2008). Interferons and viruses: an interplay between induction, signalling, antiviral responses and virus countermeasures. Journal of General Virology, 89, 1-47. https://doi.org/10.1099/vir.0.83391-0
  • Reese, S. M., Beaty, M. K., Gabitzsch, E. S., Blair, C. D., & Beaty, B. J. (2009). Aedes triseriatus females transovarially infected with La Crosse virus mate more efficiently than uninfected mosquitoes. Journal of Medical Entomology, 46, 1152-1158. https://doi.org/10.1603/033.046.0524
  • Reguera, J., Weber, F., & Cusack, S. (2010). Bunyaviridae RNA polymerases (L protein) have an N terminal, influenza-like endonuclease domain, essential for viral cap-dependent transcription. PLoS Pathogens, 6, e1001101. https://doi.org/10.1371/journal.ppat.1001101
  • Rosenberg, R., Johansson, M. A., Powers, A. M., & Miller, B. R. (2013). Search strategy has influenced the discovery rate of human viruses. Proceedings of the National Academy of Sciences, 110, 13961-13964. https://doi.org/10.1073/pnas.1307243110
  • Schoggins, J. W., & Rice, C. M. (2011). Interferon-stimulated genes and their antiviral effector functions. Current Opinion in Virology, 1, 519-525. https://doi.org/10.1016/j.coviro.2011.10.008
  • Shi, X., Goli, J., Clark, G., Brauburger, K., & Elliott, R. M. (2009). Functional analysis of the Bunyamwera orthobunyavirus Gc glycoprotein. The Journal of General Virology, 90, 2483-2492. https://doi.org/10.1099/vir.0.013540-0
  • Shi, X., Kohl, A., Léonard, V. H., Li, P., McLees, A., & Elliott, R. M. (2006). Requirement of the N-terminal region of orthobunyavirus nonstructural protein NSm for virus assembly and morphogenesis. Journal of Virology, 80(16), 8089-8099. https://doi.org/10.1128/JVI.00579-06
  • Shi, X., Lappin, D. F., & Elliott, R. M. (2004). Mapping the Golgi targeting and retention signal of Bunyamwera virus glycoproteins. Journal of General Virology, 78, 10793-10802. https://doi.org/10.1128/JVI.78.19.10793-10802.2004
  • Szemiel, A. M., Failloux, A. B., & Elliott, R. M. (2012). Role of Bunyamwera orthobunyavirus NSs protein in infection of mosquito cells. PLOS Neglected Tropical Diseases, 6, e1823. https://doi.org/10.1371/journal.pntd.0001823
  • Taylor, K. G., & Peterson, K. E. (2014). Innate immune response to La Crosse virus infection. Journal of Neurovirology, 20, 150-156.
  • Thomas, D., Blakqori, G., Wagner, V., Banholzer, M., Kessler, N., Elliott, R. M., & Weber, F. (2004). Inhibition of RNA polymerase II phosphorylation by a viral interferon antagonist. Journal of Biological Chemistry, 279(30), 31471-31477. https://doi.org/10.1074/jbc.M400938200
  • Tokarz, R., Williams, S.H., Sameroff, S., Sanchez, L.M, Jain, K., & Lipkin, W.I. (2014). Virome analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses. Journal of Virology, 88, 11480-11492. https://doi.org/10.1128/JVI.01858-14
  • Uchida, K., Murakami, T., Sueyoshi, M., Tsuda, T., Inai, K., Acorda, J.A., & Tateyema, S. (2000). Detection of Akabane viral antigens in spontaneous lymphohistiocytic encephalomyelitis in cattle. Journal of Veterinary Diagnostic İnvestigation, 12(6), 518-524. https://doi.org/10.1177/104063870001200605
  • Urquidi, V., & Bishop, D. H. (1992). Non-random reassortment between the tripartite RNA genomes of La Crosse and snowshoe hare viruses. Journal of General Virology, 73, 2255-2265. https://doi.org/10.1099/0022-1317-73-9-2255
  • Vaheri, A., Strandin, T., Hepojoki, J., Sironen, T., Henttonen, H., Mäkelä, S., & Mustonen, J. (2013). Uncovering the mysteries of hantavirus infections. Nature Reviews Microbiology, 11(8), 539-550.
  • Van Poelwijk, F., Prins, M., & Goldbach, R. (1997). Completion of the impatiens necrotic spot virus genome sequence and genetic comparison of the L proteins within the family Bunyaviridae. Journal of General Virology, 78(3), 543-546. https://doi.org/10.1099/0022-1317-78-3-543
  • Varela, M., Schnettler, E., Caporale, M., Murgia, C., Barry, G., McFarlane, M., & Palmarini, M. (2013). Schmallenberg virus pathogenesis, tropism and interaction with the innate immune system of the host. PLoS Pathogenes, 9(1), e1003133. https://doi.org/10.1371/journal.ppat.1003133
  • Weber, M., Gawanbacht, A., Habjan, M., Rang, A., Borner, C., Schmidt, A. M., Veitinger, S., Jacob, R., Devignot, S., Kochs, G., García-Sastre, A., & Weber, F. (2013). Incoming RNA virus nucleocapsids containing a 5'-triphosphorylated genome activate RIG-I and antiviral signaling. Cell Host & Microbe, 13(3), 336-346. https://doi.org/10.1016/j.chom.2013.01.012
  • Wernike, K., Aebischer, A., Sick, F., Szillat, K. P., & Beer, M. (2021). Differentiation of Antibodies against Selected Simbu Serogroup Viruses by a Glycoprotein Gc-Based Triplex ELISA. Veterinary Sciences, 8(1), 12. https://doi.org/10.3390/vetsci8010012
  • Wernike, K., Hoffmann, B., Conraths, F. J., & Beer, M. (2015). Schmallenberg virus recurrence, Germany, 2014. Emerging Infectious Diseases, 21(7), 1202. https://doi.org/10.3201/eid2107.150180
  • Vijaykrishna, D., Mukerji, R., & Smith, G.J.D. (2015). RNA Virus Reassortment: An Evolutionary Mechanism for Host Jumps and Immune Evasion. PLoS Pathog, 11(7): e1004902. https://doi.org/10.1371/journal.ppat.1004902
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  • Yanase, T., Aizawa, M., Kato, T., Yamakawa, M., Shirafuji, H., & Tsuda, T. (2010). Genetic characterization of Aino and Peaton virus field isolates reveals a genetic reassortment between these viruses in nature. Virus Research, 153(1), 1-7. https://doi.org/10.1016/j.virusres.2010.06.020
  • Yanase, T., Kato, T., Aizawa, M., Shuto, Y., Shirafuji, H., Yamakawa, M., & Tsuda, T. (2012). Genetic reassortment between Sathuperi and Shamonda viruses of the genus Orthobunyavirus in nature: implications for their genetic relationship to Schmallenberg virus. Archives of Virology, 157(8), 1611-1616.
Toplam 71 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Veteriner Cerrahi
Bölüm Reviews
Yazarlar

İlker Şahinkesen 0000-0002-1915-6908

Fırat Doğan

Seval Bılge Dagalp 0000-0002-1166-721X

Yayımlanma Tarihi 31 Aralık 2022
Gönderilme Tarihi 2 Eylül 2022
Yayımlandığı Sayı Yıl 2022 Cilt: 1 Sayı: 2

Kaynak Göster

APA Şahinkesen, İ., Doğan, F., & Bılge Dagalp, S. (2022). Current classification of Peribunyaviridae family: genetic diversity and contributing factors. Veterinary Journal of Kastamonu University, 1(2), 42-58.
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